miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167020557|gb|CU401482.1|CU401482 CGGCCGGGGCTCCTTTTTTCATTCTAGCATCATCATCATCATCATCTCTCTCTCTCTCTCTCTCTCTCAGGTTGGTGATC
ATCATGGGGACACAGGCCAAAGCAGATGCAGAGGAGGAGACCAATATGGCAGCTTGGCTTCTGGGTGTCAAGAACCTCAA
AATTCAACCCTACCATCTCCCTCCTCTTGGCCCTCACCATGTTAAGGTCCAGGTAAAGGCTCTTGGTATCTGTGGAAGTG
ATGTTCATCACTTCAAGTCAATGCGGTGTGCAAACTTCATCGTCAAGAAGCCTATGGTAATAGGCCATGAGTGTGCTGGG
ATCATAGAAGAAGTTGGGACTGAGGTGAAGTCTCTGGTTGTTGGTGACCGTGTAGCCTTGGAGCCCGGAATCAGTTGTGG
CAGATGCCGTCACTGCAAAGATGGCCGCTATAATCTTTGCCCAGAAATGAAATTCTTCGGATCTCCACCAACTAATGGTT
CGCTTGCCAATAAGGTGGTGCATCCTGCACATCTGTGTTACAAGCTACCGGAAAATGTGAGCTTGGAGGAAGGAGCAATG
TGCGAACCCCTCAGTGTTGGTGTACACGCTTGTCGCCGAGCAAATATCAATCCTGAGACCAACATACTCATAATAGGATC
AGGGCCAATTGGCCTTGTTACCTTATTAGCAGCCCGTGCTTTTGGAG




Most similar to sp|Q1PSI9|IDND_VITVI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera
           GN=GSVIVT00012394001 PE=1 SV=2
          Length = 366

 Score =  342 bits (878), Expect = 1e-93
 Identities = 158/190 (83%), Positives = 179/190 (94%)
 Frame = +3

Query: 117 ETNMAAWLLGVKNLKIQPYHLPPLGPHHVKVQVKALGICGSDVHHFKSMRCANFIVKKPM 296
           E NMAAWLLG+K LKIQPY LP LGP+ VKV++KA+GICGSDVHHFK+MRCANFIVKKPM
Sbjct: 18  EENMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPM 77

Query: 297 VIGHECAGIIEEVGTEVKSLVVGDRVALEPGISCGRCRHCKDGRYNLCPEMKFFGSPPTN 476
           VIGHECAGIIEEVG+EVK+LV GDRVALEPGISC RC  C++G+YNLC EMKFFGSPPTN
Sbjct: 78  VIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTN 137

Query: 477 GSLANKVVHPAHLCYKLPENVSLEEGAMCEPLSVGVHACRRANINPETNILIIGSGPIGL 656
           GSLAN+VVHP++LC+KLP+NVSLEEGAMCEPLSVG+HACRRAN+ PETN+LI+GSGPIGL
Sbjct: 138 GSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGL 197

Query: 657 VTLLAARAFG 686
           VT+LAARAFG
Sbjct: 198 VTMLAARAFG 207